I meant the launch time itself, in the Launch tab. Don't lose sleep over a 1s difference in launch time, as Orbiter is not using UTC, so there is already a difference of 50s or so in the 1980s.
BTW: could you post the (troublesome) launch time you input into ME, so I can then confirm this issue gets fixed?
For now (v1.8) I'll change the LCC so there is less chance, or hopefully none, of falling into this hole again. Eventually (v2.0) I'll change the start time to T-40s or so (somewhere where no commands are issued) to avoid this entirely.
Ah ok I just tried setting the launch time on the Launch tab to 12:02:59 instead of 12:03:00 (the troublesome time) and it fixes the issue. Here is the json file with the unmodified launch time:
