Glad to see you got the problem with the mesh fixed!
By the way, if you want to improve the vessel's performance (so that it doesn't perform like a Bricklin SV-1), change these lines in the configuration file...
EMPTY_MASS=10e4
FUEL_MASS=10e4
MAIN_THRUST=10e6
RETRO_THRUST =10e6
ATTITUDE_THRUST=15e6
HOVER_THRUST=10e6
ISP=2.5e7
to these...
EMPTY_MASS=10e4
FUEL_MASS=30e4
MAIN_THRUST=700e6
RETRO_THRUST =700e6
ATTITUDE_THRUST=450e6
HOVER_THRUST=700e6
ISP=11.5e7
Oh, and by the way, the spacecraft looks really good in combination with my STPSP: Cardassia add-on.