I am no Indy but I think I can partly address these:
a) You do not have to make a call on whether P40 (SPS burn) or P41 (RCS burn) is used. MCC, in both real life and NASSP, tells you what it will be when they give you the P30 PAD. It generally depends, I think, on the magnitude of DV required (although if I recall, in real life, MCC directed P40/SPS burns for the early burns in one or missions, even if they were very short, so they could get data on how the SPS was performing and to calibrate data for future burns). From your P30 PAD screenshot, you can see from the 3rd line it says “SPS” - therefore when it comes to actually going through the checklist before the TiG you will have the choice of P40 or P41, and you will PRO on P40 (and Fail P41 if it comes to that). And vice versa if the P30 is an “RCS” burn. There are only so many burns in a typical mission and you will soon get a feel for which is which (eg for Apollo 11 LOI will always be P40; the Sep burn after undocking will always be P41 etc).
b) If the primary burn was accurate, with some residuals, I don’t think failure to trim will be a major problem. The flight plan generally indicates if you should trim or not. I think trimming will provide better results in terms of more accurate timings compared to real life, but that is speculation, and we’re probably only talking minutes of different by the time you get to the moon.
c) see (a) above, the decision has been made for you! In this case it is SPS P40 (“PRO” on that step).
hope that helps